When running Foundation with a project which is located on a network drive, some of the implementation status indicators may not be properly updated. For example, after running Implementation, you may not see the Implement Status dialog appear after the Flow Engine has completed. Additionally, you may not see the status indicator icons (green checkmark, yellow question mark) update in the flow tab of the Project Manager, and the Implementation status notated next to the Revision in the Versions tab (ie, (Implemented OK)) may not update.
To workaround this problem, you can move your project files to the local drive rather than the network drive.
If you choose to leave the project on the network drive, closing Foundation and reopening it will update the status indicators in the Project Manager.